Former principal Prof Iain Gillespie told staff in November that job losses were "inevitable" and blamed "an extremely challenging period" for the UK higher education sector.
Prof Gillespie resigned a month later after the university defended a £7,000 business trip he took to Hong Kong with a colleague.
Amanda Millar, the university's court chairwoman, resigned with immediate effect last month.
Local members of the the University and College Union (UCU) Scotland are in the final week of a three-week strike over proposed job cuts.
The university said that factors including a "severe drop" in international student recruitment and an increase in National Insurance contributions were to blame for the deficit.
However, it added that internal factors including "inadequate financial discipline and control" and "poor capital planning and investment decisions" had also contributed to the situation.
Dundee West SNP MSP Joe FitzPatrick said: "The level of job losses being suggested is simply unacceptable.
"There still remains a lack of clarity about how the university ended up at this point and why these issues weren't addressed sooner.
"Staff who are hearing that their jobs are at risk deserve more transparency from the university."
Local Scottish Labour MSP Michael Marra said the news would be "devastating" for university staff and the city of Dundee.
He said: "I think this is probably one of the biggest redundancies in the history of Scottish higher education.
"What's clear is that there is a story of huge failure of leadership from the university over a period of years."