The Aberdeen and Grampian Chamber of Commerce said it was "deeply concerned" by the announcement, which it said came at an "already worrying time for the North Sea supply chain".
Chief executive Russell Borthwick said: "Thousands of skilled jobs across the region depend on companies like Petrofac, which sit at the heart of both our oil and gas and energy transition sectors.
"While many of Petrofac's challenges predate the current government, this is another stark reminder that the UK government must urgently act to restore confidence and stability in the energy industry."
Scottish Conservative energy spokesman Douglas Lumsden said oil and gas workers had been "abandoned" by both the UK and Scottish governments.
Scotland's First Minister John Swinney described the announcement as "incredibly concerning" and said his government was ready to support Petrofac staff.
He called on the UK government to "urgently revisit" a 78% windfall tax on North Sea oil and gas profits.
A spokesperson for the UK Department of Energy Security and Net Zero said the UK arm of Petrofac "is continuing to operate as normal, as an in-demand business with a highly-skilled workforce and many successful contracts".
They said the administration process was a result of "long-standing issues" in the firm's worldwide operations.
The spokesperson added: "The government will continue to work with the UK company as it focuses on its long-term future."